PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00179.1_g00067.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 346aa    MW: 39084.9 Da    PI: 4.5063
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00179.1_g00067.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.7e-1869119155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              ++++GVr++  +g+WvAeIr+p   + r  r +lg+f taeeAa a+++a++ ++g
  Rsa1.0_00179.1_g00067.1  69 CRFRGVRQRV-WGKWVAEIREP---N-RvSRLWLGTFPTAEEAACAYDEAARVMYG 119
                              689*****99.**********8...2.58**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1169119IPR001471AP2/ERF domain
CDDcd000183.03E-3069127No hitNo description
SuperFamilySSF541712.75E-2070128IPR016177DNA-binding domain
PROSITE profilePS5103221.77370127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3070127IPR001471AP2/ERF domain
SMARTSM003801.1E-3570133IPR001471AP2/ERF domain
PRINTSPR003671.1E-97182IPR001471AP2/ERF domain
PRINTSPR003671.1E-993109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSVYEQTGTV TSSKKRKSRS RADGKTVADR LKQWKDSNGG ENQQRRIVHA KGSKKGCMRG  60
KGGPENTNCR FRGVRQRVWG KWVAEIREPN RVSRLWLGTF PTAEEAACAY DEAARVMYGP  120
LARLNFPGSV GSEFTSTSSQ SEVCTVEDKV VIGVDVCVKR EDTDCESKPV SQIVDVKQSY  180
GDSRLQDSSV VEHRDVVNSR LSSYLLDEFE QDYQSRLTKE LEKPKEEEEV IQPQQEPEPE  240
LTVADYGWTI DMQNEQGFWD QDDLFDVDEL LGDLDVDLLP GSDPSQNQNQ EQVHPGGNDS  300
HPFMLEPHND PCQNQSQVQP SGDYSHPLEL EPHNGHEFFD LGFLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-1771132668ATERF1
3gcc_A7e-1771132668ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894310.0AC189431.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068B07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626050.11e-168PREDICTED: dehydration-responsive element-binding protein 2B-like
SwissprotO821335e-99DRE2B_ARATH; Dehydration-responsive element-binding protein 2B
TrEMBLA0A0D3BAM91e-168A0A0D3BAM9_BRAOL; Uncharacterized protein
STRINGBra001386.1-P1e-152(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28741765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11020.12e-73DRE/CRT-binding protein 2B